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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52320240_52320277_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
52320240 - 52320277
Intron Length:
38

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATAAATT
5'SS Class:
major
3'SS Sequence:
TAAAGAAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCATATCC
Flanking Amino Acid:
NFAFKDKYKQVNNLLSLSAA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1
73.3
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
48.5
-0
1.1
38.2
42.2
Minor 5ss
46.6
-0.4
3
66.3
39
Minor BPS
52.4
0.05
1.9
66.81
38.3

Associated Gene:

Gene:
SLC25A31
Ensembl Gene ID:
ENSAPLG00000024897
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030502
52316832 - 52325820
8989