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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52320240_52322302_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
52320240 - 52322302
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATAAATT
5'SS Class:
major
3'SS Sequence:
AGGTGCTGCTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATAT
Flanking Amino Acid:
NFAFKDKYKQRQFQGLSDCI
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1
73.3
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
44.7
-0.3
1.7
46.7
45.3
Minor 5ss
46.6
-0.4
3
66.3
39
Minor BPS
56.4
0.28
1.7
77.34
39.2

Associated Gene:

Gene:
SLC25A31
Ensembl Gene ID:
ENSAPLG00000024897
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032451
52318837 - 52325820
6984