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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52320362_52322291_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52320362 - 52322291
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTCTT
5'SS Class:
major
3'SS Sequence:
TATTTTATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATAT
Flanking Amino Acid:
QNRVVLSLMVGAAERQFQGL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.4
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.6
0.58
0.9
76.1
37.4
Minor 5ss
40.4
-1.1
3.1
56.3
42.2
Minor BPS
56.4
0.28
1.7
77.34
39.2

Associated Gene:

Gene:
SLC25A31
Ensembl Gene ID:
ENSAPLG00000024897
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039971
52318837 - 52325820
6984