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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52322405_52322643_F

Intron Information:

Intron Rank:
5
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
52322405 - 52322643
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATACTGA
5'SS Class:
weak_minor
3'SS Sequence:
TCCTATCTGCTAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TATTTCCTATCT
Flanking Amino Acid:
GFGISVQGIIIGRAFYRPSA
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.1
46.6
38
Major BPS
68
0.45
1
57.8
39
Major PPT
67.5
0.39
1
61.7
39.7
Minor 5ss
54.4
0.15
2.6
68.8
43.7
Minor BPS
59.1
0.36
1.9
81.7
39.5

Associated Gene:

Gene:
SLC25A31
Ensembl Gene ID:
ENSAPLG00000024897
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032451
52318837 - 52325820
6984
ENSAPLT00000030502
52316832 - 52325820
8989
ENSAPLT00000039971
52318837 - 52325820
6984