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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52322827_52325575_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52322827 - 52325575
Intron Length:
2749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
GATTCGTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTTCTCAGTA
Flanking Amino Acid:
EIVRRRMMMQSGEAMKRTLD
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
68.5
0.42
1.1
61.7
44.1
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
60.1
0.31
1.7
75.18
36.6

Associated Gene:

Gene:
SLC25A31
Ensembl Gene ID:
ENSAPLG00000024897
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039971
52318837 - 52325820
6984
ENSAPLT00000032451
52318837 - 52325820
6984
ENSAPLT00000030502
52316832 - 52325820
8989