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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52325627_52325664_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
52325627 - 52325664
Intron Length:
38

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
ATGCAATATAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAATGCTTAATG
Flanking Amino Acid:
TLDCFMEIKQQEGLNAFFHG
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
51.7
0.04
1.2
49.8
41.7
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
62.3
0.25
1.8
65.45
42.4

Associated Gene:

Gene:
SLC25A31
Ensembl Gene ID:
ENSAPLG00000024897
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039971
52318837 - 52325820
6984
ENSAPLT00000032451
52318837 - 52325820
6984
ENSAPLT00000030502
52316832 - 52325820
8989