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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52326862_52330758_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52326862 - 52330758
Intron Length:
3897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTTTTACTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTTCTTTTACT
Flanking Amino Acid:
IANEYSDRCTPACISLGSKT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.5
42.9
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
80.1
0.68
0.8
81.2
29.7
Minor 5ss
32.5
-2
2.7
41.4
38.2
Minor BPS
74.3
0.85
1.5
87.77
37.8

Associated Gene:

Gene:
HSPA4L
Ensembl Gene ID:
ENSAPLG00000008176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008587
52326755 - 52350461
23707