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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52332337_52334036_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52332337 - 52334036
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TATTACAGAATT
Flanking Amino Acid:
KMPNGSVGVKVRYLDEERLF
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
87
0.83
0.7
85.2
27.8
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
52.4
0.15
1.9
76.72
39.1

Associated Gene:

Gene:
HSPA4L
Ensembl Gene ID:
ENSAPLG00000008176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008587
52326755 - 52350461
23707