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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52337416_52338405_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52337416 - 52338405
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTCTTTCACT
Flanking Amino Acid:
ICAFNKGKLKVLATTFDPFL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.1
36
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.7
0.51
1
66.9
37.7
Minor 5ss
48.5
-0.1
2.8
68
43.2
Minor BPS
72.8
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
HSPA4L
Ensembl Gene ID:
ENSAPLG00000008176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008587
52326755 - 52350461
23707