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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52338838_52340029_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52338838 - 52340029
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CACTCTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATGATAACT
Flanking Amino Acid:
PPLRAAMEQAKLDREDIYSI
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
76.7
0.6
0.8
69
36.7
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
47.8
-0
2.3
73.1
43.7

Associated Gene:

Gene:
HSPA4L
Ensembl Gene ID:
ENSAPLG00000008176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008587
52326755 - 52350461
23707