Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5234047_5235611_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5234047 - 5235611

Intron Length:

1565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTACTTCAATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTTAT

U12 Branch Point Sequence:

CTTACTTCAATC

Flanking Amino Acid:

AGEKGAAGLKGDPGERGEKG

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

Major BPS

74.8

0.62

0.9

63.7

35.1

Major PPT

71.6

0.49

71.6

38.2

Minor 5ss

-1.4

2.8

51.9

44.6

Minor BPS

58.3

0.24

1.6

66.98

39.2

Associated Gene:

Gene:

COL25A1

Ensembl Gene ID:

ENSAPLG00000008681

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009056

5201163 - 5301226

100064