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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52340820_52341206_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52340820 - 52341206
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTATCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATTTACTTAATG
Flanking Amino Acid:
RWKSSYEEGTGECEVFSKNH
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
74.3
0.55
0.9
71.3
39.4
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
72.7
0.57
1.5
75.01
36.8

Associated Gene:

Gene:
HSPA4L
Ensembl Gene ID:
ENSAPLG00000008176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008587
52326755 - 52350461
23707