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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52347931_52349006_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52347931 - 52349006
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CTTGTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAGAT
U12 Branch Point Sequence:
TTGTATTTACAG
Flanking Amino Acid:
VYMDKLQELRKFGQPIQERY
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.5
43.4
Major BPS
54.8
0.12
1.2
51.3
42.7
Major PPT
83
0.74
0.9
76.4
36.7
Minor 5ss
36.6
-1.5
3.5
47.4
42.4
Minor BPS
47.9
-0.3
1.9
57.17
44.4

Associated Gene:

Gene:
HSPA4L
Ensembl Gene ID:
ENSAPLG00000008176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008587
52326755 - 52350461
23707