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Intron Name: Anas_platyrhynchos_platyrhynchos_4_5235666_5245612_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5235666 - 5245612

Intron Length:

9947

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTTCG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGCATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTTCTTAACT

Flanking Amino Acid:

PGVPGRDGQVGEPGLPGVAG

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

70.2

36.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.8

0.58

0.9

74.3

35.6

Minor 5ss

35.2

-1.7

2.8

38.5

40.7

Minor BPS

87.9

1.27

0.9

95.32

31.5

Associated Gene:

Gene:

COL25A1

Ensembl Gene ID:

ENSAPLG00000008681

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009056

5201163 - 5301226

100064