About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52373465_52375467_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52373465 - 52375467
Intron Length:
2003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GTGTTCTTGACA
Flanking Amino Acid:
NRKKPFSEEEARHFLHQIIT
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
72.8
0.51
1.1
68.6
42.1
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
72.4
0.7
1.2
74.54
37

Associated Gene:

Gene:
PLK4
Ensembl Gene ID:
ENSAPLG00000009390
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009839
52372117 - 52386996
14880