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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52376045_52390412_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52376045 - 52390412
Intron Length:
14368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TTTTCCTTCAAG
Flanking Amino Acid:
YSKLLGPKPQQPLVLMLEEP
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
77.5
0.62
1
75.8
33.1
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
66.9
0.39
2
76.73
40.6

Associated Gene:

Gene:
MFSD8
Ensembl Gene ID:
ENSAPLG00000009632
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010042
52375913 - 52396984
21072