About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52382173_52383051_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52382173 - 52383051
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATACAAAT
Flanking Amino Acid:
TADVEVCFYDGAKIHKTAGI
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.2
0.79
0.8
79.6
31.8
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
48
-0
2
75.91
40.1

Associated Gene:

Gene:
PLK4
Ensembl Gene ID:
ENSAPLG00000009390
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009839
52372117 - 52386996
14880