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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52383990_52384369_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52383990 - 52384369
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTTT
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATTTGTTTCATT
Flanking Amino Acid:
SVPFFPIIVGRKPGNTESPK
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
72.3
39.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.6
0.8
0.8
77.4
41.2
Minor 5ss
41.3
-1
3.7
64.1
47.4
Minor BPS
52.7
0.17
2.1
77.48
40

Associated Gene:

Gene:
PLK4
Ensembl Gene ID:
ENSAPLG00000009390
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009839
52372117 - 52386996
14880