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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52386581_52386896_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52386581 - 52386896
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTTACCT
Flanking Amino Acid:
TYTSPDGQTTRYGENDKLPE
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.4
0.73
0.8
77.7
30.9
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
61.8
0.45
1.8
80.33
41.9

Associated Gene:

Gene:
PLK4
Ensembl Gene ID:
ENSAPLG00000009390
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009839
52372117 - 52386996
14880