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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52390670_52390764_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52390670 - 52390764
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTTCTTAGTG
Flanking Amino Acid:
GKKLPNIQWQEIKNNSIPRT
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.6
0.87
0.7
83.2
31.9
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
63.4
0.28
1.6
67.64
40.4

Associated Gene:

Gene:
MFSD8
Ensembl Gene ID:
ENSAPLG00000009632
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031166
52388940 - 52396984
8045
ENSAPLT00000010042
52375913 - 52396984
21072
ENSAPLT00000035787
52388940 - 52396984
8045