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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52392456_52393021_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52392456 - 52393021
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTATA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTAGTTTACAA
Flanking Amino Acid:
QCSSINFEGEESGVPDQDAE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
79.7
35.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
53.4
0.12
2.1
68.6
42.1
Minor BPS
45.4
-0.3
2
59.39
40.5

Associated Gene:

Gene:
MFSD8
Ensembl Gene ID:
ENSAPLG00000009632
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031166
52388940 - 52396984
8045
ENSAPLT00000010042
52375913 - 52396984
21072
ENSAPLT00000035787
52388940 - 52396984
8045