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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52393081_52393697_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52393081 - 52393697
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TGTAAATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTGTATTAATG
Flanking Amino Acid:
INIILIFAVFREHRVDDMGR
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.2
0.43
1
59.3
45.9
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
53.5
-0
1.8
60.63
41.6

Associated Gene:

Gene:
MFSD8
Ensembl Gene ID:
ENSAPLG00000009632
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031166
52388940 - 52396984
8045
ENSAPLT00000010042
52375913 - 52396984
21072
ENSAPLT00000035787
52388940 - 52396984
8045