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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52395866_52396866_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52395866 - 52396866
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTCTTTATGT
Flanking Amino Acid:
MYLTMFLSSVGFSIVIMSVW
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.7
0.6
0.9
70.2
39.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
60
0.39
1.9
79.06
43.7

Associated Gene:

Gene:
MFSD8
Ensembl Gene ID:
ENSAPLG00000009632
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031166
52388940 - 52396984
8045
ENSAPLT00000010042
52375913 - 52396984
21072
ENSAPLT00000035787
52388940 - 52396984
8045