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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52411010_52413001_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52411010 - 52413001
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTGATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATGTAATAACT
Flanking Amino Acid:
GMTGISMGGHMASLAVTNWP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
80.8
34.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.6
0.51
0.9
65.9
39.4
Minor 5ss
57.8
0.26
2.7
78.1
36.5
Minor BPS
50.5
0.09
2
75.11
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010204
52410908 - 52418634
7727