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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52415557_52417430_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52415557 - 52417430
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATATTGATT
Flanking Amino Acid:
DECTHVANFSVPVDPSLIIV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.1
0.86
0.6
84.5
23.5
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
53.2
0.18
1.6
72.19
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010204
52410908 - 52418634
7727