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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52417594_52418582_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52417594 - 52418582
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGATCTATAATT
Flanking Amino Acid:
SAYLFKQGLFRQAIYDAFDR
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.9
0.67
0.8
72.8
37.5
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
64.2
0.52
1.6
78.66
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010204
52410908 - 52418634
7727