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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52444479_52444739_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52444479 - 52444739
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGCAAA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCCTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69.6
36.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77.6
0.62
1
78.9
33
Minor 5ss
46.5
-0.4
2.6
56.9
42.1
Minor BPS
74.6
0.86
1.6
87.9
37.7

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894