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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52444912_52448675_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52444912 - 52448675
Intron Length:
3764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
AGGTTCATATTT
Flanking Amino Acid:
RFSKNI*NVKLSIISAQKTW
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
71.2
40.6
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
88.4
0.86
0.6
82.3
29.8
Minor 5ss
36.5
-1.5
3
46.2
42.5
Minor BPS
47.4
-0.1
1.8
63.52
41.1

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894