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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52448821_52450363_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52448821 - 52450363
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
L*LQMLCLFWRP*RTAQKLK
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.4
0.68
0.9
73.2
37.3
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894