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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52450539_52451333_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52450539 - 52451333
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGGAT
5'SS Class:
major
3'SS Sequence:
TTTCCAATGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GGAATTTGAACT
Flanking Amino Acid:
YQDKFLALILSLHQVLQE*E
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
68.1
36.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
66.2
0.36
1
59.9
40.6
Minor 5ss
30.4
-2.2
3.7
42.7
46.8
Minor BPS
50.8
0.1
1.4
64.01
39.7

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894