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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52452223_52453435_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52452223 - 52453435
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTAATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTCTAATT
Flanking Amino Acid:
WSRVKMTLQ*SKRLRTLRS*
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.8
0.67
0.9
78.3
33.8
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
75
0.86
1.6
92.5
29.7

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894