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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52454626_52455016_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52454626 - 52455016
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATGGA
5'SS Class:
major
3'SS Sequence:
TTTACTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATTTACT
Flanking Amino Acid:
LLKKHSPLM*RLQEKEKHDT
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
65.7
40.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81.7
0.71
0.7
81.1
30.7
Minor 5ss
30
-2.3
3.4
40.4
45.8
Minor BPS
61.5
0.44
1.9
79.82
41.7

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894