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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52455828_52456268_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52455828 - 52456268
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
TTCCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
GGAACCTTAAAA
Flanking Amino Acid:
TTNTIGDV*WRGNGWELASP
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
63.2
43.4
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
86.9
0.83
0.7
84.6
23.1
Minor 5ss
37.7
-1.4
3
42.7
44.4
Minor BPS
61.7
0.36
1.5
64.8
40.3

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894