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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52459145_52459991_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52459145 - 52459991
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AATCTTCTAACA
Flanking Amino Acid:
NLEDWRTSEWILLLVKSPAR
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.6
0.76
0.8
82.1
34.6
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
53.6
0.11
1.6
64.97
34.6

Associated Gene:

Gene:
LARP1B
Ensembl Gene ID:
ENSAPLG00000010129
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010571
52444335 - 52460228
15894