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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52469185_52478050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52469185 - 52478050
Intron Length:
8866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAA
U12 Branch Point Sequence:
AAAACTTGAAGG
Flanking Amino Acid:
VTKGSKFYGPEGPYGIFAGR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
54
0.1
1.1
61.6
34.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
45.3
-0.5
1.8
45.75
40.2

Associated Gene:

Gene:
PGRMC2
Ensembl Gene ID:
ENSAPLG00000028947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035902
52467074 - 52478445
11372