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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52484348_52484718_F

Intron Information:

Intron Rank:
134614
Intron Class:
major
Intron Phase:
Intron Coordinates:
52484348 - 52484718
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
TTTCATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CCTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.3
0.82
0.7
81.2
30.4
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
60.9
0.42
1.8
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022361
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034775
52484239 - 52487983
3745