About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52530806_52531675_F

Intron Information:

Intron Rank:
138499
Intron Class:
major
Intron Phase:
Intron Coordinates:
52530806 - 52531675
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTACTTCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
93.5
0.98
0.7
92.3
26.6
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
51.2
0.12
2.2
76.43
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024588
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020584
52530543 - 52532179
1637