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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52531744_52531868_F

Intron Information:

Intron Rank:
138500
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
52531744 - 52531868
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AAAGTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
76.8
37.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.2
0.81
0.8
85.2
28.4
Minor 5ss
52.4
0.08
2.5
78.4
35.5
Minor BPS
59.8
0.29
1.3
62.12
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024588
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020584
52530543 - 52532179
1637