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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5258701_5261707_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5258701 - 5261707
Intron Length:
3007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
DGPRGMPGIPGEPGKTGEQG
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.4
36.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
34.6
-1.8
2.8
40.9
45.3
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064