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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52621712_52623765_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52621712 - 52623765
Intron Length:
2054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACC
5'SS Class:
major
3'SS Sequence:
CATTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTGGGTTAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.4
35.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.8
0.67
0.9
73
36.9
Minor 5ss
43.2
-0.8
2.4
55.7
41.5
Minor BPS
43.4
-0.4
2.6
66.67
50

Associated Gene:

Gene:
JADE1
Ensembl Gene ID:
ENSAPLG00000015188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015840
52621583 - 52657279
35697