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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52635871_52639386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52635871 - 52639386
Intron Length:
3516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
GCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
GTGTCTCTATTT
Flanking Amino Acid:
SRHEDRKPSEVFRTDLITAM
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
82.4
0.73
0.8
76.3
32.2
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
49.1
0.01
1.9
69.01
42.5

Associated Gene:

Gene:
JADE1
Ensembl Gene ID:
ENSAPLG00000015188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015840
52621583 - 52657279
35697