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Intron Name: Anas_platyrhynchos_platyrhynchos_4_52643007_52646297_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52643007 - 52646297

Intron Length:

3291

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCAAT

5'SS Class:

major

3'SS Sequence:

TCCTGTTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATAAATA

Flanking Amino Acid:

QLANEEFKEMGMPELDEYTM

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

38.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.5

0.66

0.8

71.8

38.1

Minor 5ss

35.2

-1.7

40.3

45.6

Minor BPS

52.8

0.09

2.1

73.53

38.3

Associated Gene:

Gene:

JADE1

Ensembl Gene ID:

ENSAPLG00000015188

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015840

52621583 - 52657279

35697