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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52646510_52647315_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
52646510 - 52647315
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCGG
5'SS Class:
major
3'SS Sequence:
AACGGGAGTACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TTTCCTGTGAAC
Flanking Amino Acid:
CDKCNICVHQACYGILKVPE
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
57
47.3
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
49.7
-0
1.1
39
42.8
Minor 5ss
36.2
-1.6
3.2
47.2
48.2
Minor BPS
48.7
-0.1
2.1
68.13
37.6

Associated Gene:

Gene:
JADE1
Ensembl Gene ID:
ENSAPLG00000015188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015840
52621583 - 52657279
35697