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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52647484_52648101_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52647484 - 52648101
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGGTTTTTAATA
Flanking Amino Acid:
HVSCALWIPEVSIGSPEKME
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.7
0.87
0.6
89.2
19.8
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
69.6
0.61
1.2
71.02
35.8

Associated Gene:

Gene:
JADE1
Ensembl Gene ID:
ENSAPLG00000015188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015840
52621583 - 52657279
35697