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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52654737_52655373_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
52654737 - 52655373
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGACTCTAACC
Flanking Amino Acid:
AKQLEQERVSGVPSSFSSME
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.8
0.53
0.9
71.8
38.6
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
60.4
0.31
1.7
71.79
39.3

Associated Gene:

Gene:
JADE1
Ensembl Gene ID:
ENSAPLG00000015188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015840
52621583 - 52657279
35697