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Intron Name: Anas_platyrhynchos_platyrhynchos_4_52676264_52677577_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52676264 - 52677577

Intron Length:

1314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGTTT

5'SS Class:

strong_major

3'SS Sequence:

GTATTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCCTAT

U12 Branch Point Sequence:

TGTATCCTATTG

Flanking Amino Acid:

VEAQKKAKIKISTMEHEHAV

Intron Amino Acid Position:

561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

81.2

33.3

Major BPS

0.25

1.2

58.5

Major PPT

84.9

0.78

0.9

77.1

41.8

Minor 5ss

48.8

-0.1

3.1

72.7

44.5

Minor BPS

45.3

-0.5

1.9

53.21

41.8

Associated Gene:

Gene:

SCLT1

Ensembl Gene ID:

ENSAPLG00000014774

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017888

52661552 - 52702271

40720

ENSAPLT00000015418

52661684 - 52702271

40588

ENSAPLT00000029968

52661684 - 52700883

39200