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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52679223_52679730_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52679223 - 52679730
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
TTTTATTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATCTTACAT
Flanking Amino Acid:
KRTVEEELEKIYREDRVHES
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
38
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.8
0.92
0.7
89.2
27.2
Minor 5ss
31.8
-2.1
3.3
38.6
40.8
Minor BPS
54.6
0.22
1.8
73.39
43.4

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015418
52661684 - 52702271
40588
ENSAPLT00000029968
52661684 - 52700883
39200
ENSAPLT00000017888
52661552 - 52702271
40720