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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52679806_52681724_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52679806 - 52681724
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTCT
5'SS Class:
major
3'SS Sequence:
TATTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTATTTTAAAA
Flanking Amino Acid:
LTEELSALQMECGEKQSQIE
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
67.5
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1
67.9
41.2
Minor 5ss
45.6
-0.5
3.1
62
44.8
Minor BPS
61.2
0.35
1.4
68.54
37.9

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029968
52661684 - 52700883
39200
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588