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Intron Name: Anas_platyrhynchos_platyrhynchos_4_52681797_52683693_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52681797 - 52683693

Intron Length:

1897

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTTAT

5'SS Class:

major

3'SS Sequence:

GTTTTGATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTATTT

Flanking Amino Acid:

EDTAARIRKAVDSAKKQYNV

Intron Amino Acid Position:

399

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

78.1

32.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.5

0.69

0.9

74.1

40.3

Minor 5ss

44.1

-0.6

2.9

63.8

41.6

Minor BPS

64.4

0.53

1.7

84.57

36.4

Associated Gene:

Gene:

SCLT1

Ensembl Gene ID:

ENSAPLG00000014774

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029968

52661684 - 52700883

39200

ENSAPLT00000017888

52661552 - 52702271

40720

ENSAPLT00000015418

52661684 - 52702271

40588