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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52683793_52686533_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52683793 - 52686533
Intron Length:
2741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCAGTAGTA
Flanking Amino Acid:
LEEANLQKSQALFGEKQKEE
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87.4
0.84
0.7
81.2
36.5
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
48.4
-0.1
2.4
72.44
39.9

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029968
52661684 - 52700883
39200
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588